Flexible Pattern Matching in Strings: Practical On-Line Search Algorithms for Texts and Biological Sequences

by Gonzalo Navarro and Mathieu Raffinot

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String matching problems range from the relatively simple task of searching a single text for a string of characters to searching a database for approximate occurrences of a complex pattern. Recent years have witnessed a dramatic increase of interest in sophisticated string matching problems, especially in information retrieval and computational biology. This book presents a practical approach to string matching problems, focusing on the algorithms and implementations that perform best in practice. It covers searching for simple, multiple and extended strings, as well as regular expressions, and exact and approximate searching. It includes all the most significant new developments in complex pattern searching. The clear explanations, step-by-step examples, algorithm pseudocode, and implementation efficiency maps will enable researchers, professionals and students in bioinformatics, computer science, and software engineering to choose the most appropriate algorithms for their applications.
  • ISBN13 9780521039932
  • Publish Date 26 July 2007 (first published 27 May 2002)
  • Publish Status Active
  • Publish Country GB
  • Imprint Cambridge University Press
  • Format Paperback (US Trade)
  • Pages 232
  • Language English